Annotation of co-expression genes

PH01000126G0310's details annotation

1.Annotation

ICBR annotation: chromatin-remodeling complex ATPase chain, putative, expressed

Blast result AT5G18620 : 0.00E+00
Blast annotation: chromatin remodeling factor17

2.Location

Scaffold: PH01000126
Strand: +

RegionStartEnd
gene211351220033
mRNA211351220033
exon211351211817
exon212364212495
exon212634212737
exon213374213452
exon213488213581
exon214183214280
exon214414214593
exon214677214898
exon215049215183
exon215268215550
exon215657215730
exon215911216131
exon216222216309
exon216393216486
exon216585216773
exon216857216888
exon216985217061
exon217147217236
exon217347217416
exon217599217641
exon217725217783
exon217902218067
exon218198218376
exon218451218666
exon218817218927
exon219078220033
CDS211515211817
CDS212364212495
CDS212634212737
CDS213374213452
CDS213488213581
CDS214183214280
CDS214414214593
CDS214677214898
CDS215049215183
CDS215268215550
CDS215657215730
CDS215911216131
CDS216222216309
CDS216393216486
CDS216585216773
CDS216857216888
CDS216985217061
CDS217147217236
CDS217347217416
CDS217599217641
CDS217725217783
CDS217902218067
CDS218198218376
CDS218451218666
CDS218817218927
CDS219078219242

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)SNF2

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00176.22SNF2_N256523
PF00271.30Helicase_C546658
PF09110.10HAND807885
PF09111.9SLIDE9471057

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003676nucleic acid binding
GO:0003677DNA binding
GO:0003682chromatin binding
GO:0004386helicase activity
GO:0005524ATP binding
GO:0005634nucleus
GO:0006338chromatin remodeling
GO:0016818hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0031491nucleosome binding
GO:0043044ATP-dependent chromatin remodeling

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.