PH01000126G0480's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G39080 : 3.50E-32
Blast annotation: NAD(P)-binding Rossmann-fold superfamily protein
2.Location
Scaffold: PH01000126
Strand: +
| Region | Start | End |
| gene | 400686 | 401963 |
| mRNA | 400686 | 401963 |
| exon | 400686 | 400752 |
| exon | 401309 | 401394 |
| exon | 401527 | 401591 |
| exon | 401681 | 401963 |
| CDS | 400729 | 400752 |
| CDS | 401309 | 401394 |
| CDS | 401527 | 401591 |
| CDS | 401681 | 401790 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000034 | RLK-Pelle_LRR-Xa (from iTAK) fructose_1,6-bisphosphate_1-phosphatase_activity |
| coexpression network | CFinderM001145 | mannose metabolic process, mannosidase activity, |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| null | null | null | null |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.