PH01000133G1180's details annotation
1.Annotation
ICBR annotation: CGMC_GSK.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed
Blast result AT5G26751 : 0.00E+00
Blast annotation: shaggy-related kinase 11
2.Location
Scaffold: PH01000133
Strand: +
| Region | Start | End |
| gene | 720231 | 726315 |
| mRNA | 720231 | 726315 |
| exon | 720231 | 721342 |
| exon | 721445 | 721537 |
| exon | 721792 | 721851 |
| exon | 722076 | 722348 |
| exon | 722529 | 722603 |
| exon | 722697 | 722753 |
| exon | 722822 | 722962 |
| exon | 723063 | 723113 |
| exon | 723182 | 723277 |
| exon | 723358 | 723441 |
| exon | 723565 | 723667 |
| exon | 723846 | 723924 |
| exon | 724711 | 724928 |
| exon | 725045 | 725127 |
| exon | 725275 | 725353 |
| exon | 725393 | 725443 |
| exon | 725895 | 726315 |
| CDS | 721232 | 721342 |
| CDS | 721445 | 721537 |
| CDS | 721792 | 721851 |
| CDS | 722076 | 722348 |
| CDS | 722529 | 722603 |
| CDS | 722697 | 722753 |
| CDS | 722822 | 722962 |
| CDS | 723063 | 723113 |
| CDS | 723182 | 723277 |
| CDS | 723358 | 723441 |
| CDS | 723565 | 723667 |
| CDS | 723846 | 723924 |
| CDS | 724711 | 724928 |
| CDS | 725045 | 725127 |
| CDS | 725275 | 725353 |
| CDS | 725393 | 725443 |
| CDS | 725895 | 726010 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | C3H |
| Transcription_Regulator(from PlantTFDB) | C3H |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 72 | 356 |
| PF06220.11 | zf-U1 | 440 | 471 |
| PF00642.23 | zf-CCCH | 501 | 523 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0004672 | protein kinase activity |
| GO:0004674 | protein serine/threonine kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0008270 | zinc ion binding |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.