Annotation of co-expression genes

PH01000133G1330's details annotation

1.Annotation

ICBR annotation: NAK-like ser/thr protein kinase, putative, expressed

Blast result AT4G02010 : 0.00E+00
Blast annotation: Protein kinase superfamily protein

2.Location

Scaffold: PH01000133
Strand: -

RegionStartEnd
gene794795804409
mRNA794795804409
exon794795795518
exon796145796292
exon796374796617
exon796853797168
exon798253798287
exon799066799278
exon799751800125
exon801646801789
exon801958802098
exon803618804409
CDS795144795518
CDS796145796292
CDS796374796617
CDS796853797168
CDS798253798287
CDS799066799278
CDS799751800125
CDS801646801789
CDS801958802098
CDS803618803657

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00069.24Pkinase358606

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.