PH01000136G1370's details annotation
1.Annotation
ICBR annotation: acyltransferase, putative, expressed
Blast result AT1G51260 : 4.00E-121
Blast annotation: lysophosphatidyl acyltransferase 3
2.Location
Scaffold: PH01000136
Strand: -
| Region | Start | End |
| gene | 874505 | 880241 |
| mRNA | 874505 | 880241 |
| exon | 874505 | 874711 |
| exon | 874815 | 874907 |
| exon | 875213 | 875296 |
| exon | 875400 | 875492 |
| exon | 875701 | 875826 |
| exon | 876283 | 876441 |
| exon | 876527 | 876604 |
| exon | 877500 | 877559 |
| exon | 877689 | 877762 |
| exon | 877901 | 877940 |
| exon | 879170 | 879292 |
| exon | 879877 | 880241 |
| CDS | 874556 | 874711 |
| CDS | 874815 | 874907 |
| CDS | 875213 | 875296 |
| CDS | 875400 | 875492 |
| CDS | 875701 | 875826 |
| CDS | 876283 | 876441 |
| CDS | 876527 | 876604 |
| CDS | 877500 | 877559 |
| CDS | 877689 | 877762 |
| CDS | 877901 | 877940 |
| CDS | 879170 | 879292 |
| CDS | 879877 | 879957 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000597 | GH100 Glycoside_Hydrolases RLK-Pelle_SD-2b (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01553.20 | Acyltransferase | 71 | 228 |
| PF16076.4 | Acyltransf_C | 239 | 307 |
| PF16076.4 | Acyltransf_C | 306 | 366 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Glycerolipid metabolism | lysophosphatidic acid acyltransferase / lysophosphatidylinositolacyltransferase[EC:2.3.1.51;EC:2.3.1.-] | ko00561 | K13523 |
| Glycerophospholipid metabolism | lysophosphatidic acid acyltransferase / lysophosphatidylinositolacyltransferase[EC:2.3.1.51;EC:2.3.1.-] | ko00564 | K13523 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008152 | metabolic process |
| GO:0016746 | transferase activity, transferring acyl groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.