PH01000138G0070's details annotation
1.Annotation
ICBR annotation: oxidoreductase, short chain dehydrogenase/reductase family protein, putative, expressed
Blast result AT2G29350 : 4.00E-94
Blast annotation: senescence-associated gene 13
2.Location
Scaffold: PH01000138
Strand: -
| Region | Start | End |
| gene | 72939 | 76275 |
| mRNA | 72939 | 76275 |
| exon | 72939 | 73292 |
| exon | 73612 | 73718 |
| exon | 73839 | 74055 |
| exon | 75829 | 76036 |
| exon | 76161 | 76275 |
| CDS | 73101 | 73292 |
| CDS | 73612 | 73718 |
| CDS | 73839 | 74055 |
| CDS | 75829 | 76036 |
| CDS | 76161 | 76252 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13561.5 | adh_short_C2 | 27 | 261 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| 964 Tropane, piperidine and pyridine alkaloid biosynthesis | tropine dehydrogenase [EC:1.1.1.206] | K08081 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0008152 | metabolic process |
| GO:0016491 | oxidoreductase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.