PH01000138G0690's details annotation
1.Annotation
ICBR annotation: N-dimethylguanosine tRNA methyltransferase, putative, expressed
Blast result AT5G15810 : 4.00E-161
Blast annotation: N2,N2-dimethylguanosine tRNA methyltransferase
2.Location
Scaffold: PH01000138
Strand: +
| Region | Start | End |
| gene | 449059 | 456024 |
| mRNA | 449059 | 456024 |
| exon | 449059 | 449682 |
| exon | 450508 | 450798 |
| exon | 450949 | 451036 |
| exon | 451128 | 451249 |
| exon | 451922 | 452061 |
| exon | 452140 | 452212 |
| exon | 452498 | 452586 |
| exon | 452719 | 452824 |
| exon | 452871 | 453140 |
| exon | 453684 | 454055 |
| exon | 454704 | 454898 |
| exon | 455012 | 455089 |
| exon | 455181 | 456024 |
| CDS | 449578 | 449682 |
| CDS | 450508 | 450798 |
| CDS | 450949 | 451036 |
| CDS | 451128 | 451249 |
| CDS | 451922 | 452061 |
| CDS | 452140 | 452212 |
| CDS | 452498 | 452586 |
| CDS | 452719 | 452824 |
| CDS | 452871 | 453140 |
| CDS | 453684 | 454055 |
| CDS | 454704 | 454898 |
| CDS | 455012 | 455089 |
| CDS | 455181 | 455495 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02005.15 | TRM | 13 | 428 |
| PF02005.15 | TRM | 552 | 615 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003723 | RNA binding |
| GO:0004809 | tRNA (guanine-N2-)-methyltransferase activity |
| GO:0008033 | tRNA processing |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.