PH01000140G0870's details annotation
1.Annotation
ICBR annotation: protein binding protein, putative, expressed
Blast result AT5G04460 : 6.60E-85
Blast annotation: RING/U-box superfamily protein
2.Location
Scaffold: PH01000140
Strand: -
| Region | Start | End |
| gene | 662561 | 666677 |
| mRNA | 662561 | 666677 |
| exon | 662561 | 663034 |
| exon | 663076 | 663249 |
| exon | 663694 | 663802 |
| exon | 663912 | 664014 |
| exon | 664306 | 664471 |
| exon | 664870 | 665161 |
| exon | 665264 | 665925 |
| exon | 666595 | 666677 |
| CDS | 663011 | 663034 |
| CDS | 663076 | 663249 |
| CDS | 663694 | 663802 |
| CDS | 663912 | 664014 |
| CDS | 664306 | 664471 |
| CDS | 664870 | 665161 |
| CDS | 665264 | 665925 |
| CDS | 666595 | 666666 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001044 |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13920.5 | zf-C3HC4_3 | 416 | 462 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.