PH01000140G0940's details annotation
1.Annotation
ICBR annotation: signal peptide peptidase-like 2B, putative, expressed
Blast result AT1G63690 : 0.00E+00
Blast annotation: SIGNAL PEPTIDE PEPTIDASE-LIKE 2
2.Location
Scaffold: PH01000140
Strand: -
| Region | Start | End |
| gene | 704238 | 711637 |
| mRNA | 704238 | 711637 |
| exon | 704238 | 704659 |
| exon | 704760 | 704876 |
| exon | 705732 | 705859 |
| exon | 705947 | 706030 |
| exon | 706206 | 706276 |
| exon | 706507 | 706649 |
| exon | 706729 | 706821 |
| exon | 706901 | 706954 |
| exon | 707031 | 707187 |
| exon | 707341 | 707375 |
| exon | 707848 | 708030 |
| exon | 708107 | 708258 |
| exon | 708424 | 708540 |
| exon | 709709 | 709820 |
| exon | 709910 | 710068 |
| exon | 711375 | 711637 |
| CDS | 704558 | 704659 |
| CDS | 704760 | 704876 |
| CDS | 705732 | 705859 |
| CDS | 705947 | 706030 |
| CDS | 706206 | 706276 |
| CDS | 706507 | 706649 |
| CDS | 706729 | 706821 |
| CDS | 706901 | 706954 |
| CDS | 707031 | 707187 |
| CDS | 707341 | 707375 |
| CDS | 707848 | 708030 |
| CDS | 708107 | 708258 |
| CDS | 708424 | 708540 |
| CDS | 709709 | 709820 |
| CDS | 709910 | 710068 |
| CDS | 711375 | 711497 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000794 | MYB_related Transcription_Regulator(from PlantTFDB) MYB-related Transcription_Regulator(from iTAK) RLK-Pelle_CR4L (from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02225.21 | PA | 88 | 162 |
| PF04258.12 | Peptidase_A22B | 239 | 514 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004190 | aspartic-type endopeptidase activity |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.