PH01000142G0190's details annotation
1.Annotation
ICBR annotation: CAMK_KIN1/SNF1/Nim1_like.18 - CAMK includes calcium/calmodulin depedent protein kinases, expressed
Blast result AT3G45240 : 1.20E-42
Blast annotation: geminivirus rep interacting kinase 1
2.Location
Scaffold: PH01000142
Strand: +
| Region | Start | End |
| gene | 108672 | 112407 |
| mRNA | 108672 | 112407 |
| exon | 108672 | 109770 |
| exon | 110377 | 110412 |
| exon | 110821 | 110936 |
| exon | 111015 | 111093 |
| exon | 111207 | 112407 |
| CDS | 109032 | 109770 |
| CDS | 110377 | 110412 |
| CDS | 110821 | 110936 |
| CDS | 111015 | 111093 |
| CDS | 111207 | 111346 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 243 | 340 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.