PH01000142G0870's details annotation
1.Annotation
ICBR annotation: toc64, putative, expressed
Blast result AT3G17970 : 1.00E-165
Blast annotation: translocon at the outer membrane of chloroplasts 64-III
2.Location
Scaffold: PH01000142
Strand: +
| Region | Start | End |
| gene | 537225 | 551198 |
| mRNA | 537225 | 551198 |
| exon | 537225 | 537685 |
| exon | 539939 | 540091 |
| exon | 540456 | 540564 |
| exon | 541090 | 541120 |
| exon | 542481 | 542606 |
| exon | 545063 | 545245 |
| exon | 545353 | 545497 |
| exon | 546066 | 546225 |
| exon | 547264 | 547398 |
| exon | 548008 | 548109 |
| exon | 549445 | 549645 |
| exon | 550125 | 550252 |
| exon | 550371 | 550422 |
| exon | 550644 | 550713 |
| exon | 550886 | 551198 |
| CDS | 537480 | 537685 |
| CDS | 539939 | 540091 |
| CDS | 540456 | 540564 |
| CDS | 541090 | 541120 |
| CDS | 542481 | 542606 |
| CDS | 545063 | 545245 |
| CDS | 545353 | 545497 |
| CDS | 546066 | 546225 |
| CDS | 547264 | 547398 |
| CDS | 548008 | 548109 |
| CDS | 549445 | 549645 |
| CDS | 550125 | 550252 |
| CDS | 550371 | 550422 |
| CDS | 550644 | 550713 |
| CDS | 550886 | 550968 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01425.20 | Amidase | 56 | 214 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
| GO:0016884 | carbon-nitrogen ligase activity, with glutamine as amido-N-donor |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.