PH01000144G0520's details annotation
1.Annotation
ICBR annotation: bifunctional monodehydroascorbate reductase and carbonic anhydrasenectarin-3 precursor, putative, expressed
Blast result AT3G52720 : 4.20E-56
Blast annotation: alpha carbonic anhydrase 1
2.Location
Scaffold: PH01000144
Strand: +
| Region | Start | End |
| gene | 329855 | 336840 |
| mRNA | 329855 | 336840 |
| exon | 329855 | 330073 |
| exon | 330269 | 330477 |
| exon | 330610 | 330716 |
| exon | 330802 | 330904 |
| exon | 331020 | 331202 |
| exon | 333515 | 333711 |
| exon | 333779 | 333942 |
| exon | 334454 | 334640 |
| exon | 334912 | 334993 |
| exon | 336131 | 336840 |
| CDS | 329995 | 330073 |
| CDS | 330269 | 330477 |
| CDS | 330610 | 330716 |
| CDS | 330802 | 330904 |
| CDS | 331020 | 331202 |
| CDS | 333515 | 333711 |
| CDS | 333779 | 333942 |
| CDS | 334454 | 334640 |
| CDS | 334912 | 334993 |
| CDS | 336131 | 336427 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00194.20 | Carb_anhydrase | 31 | 226 |
| PF10551.8 | MULE | 352 | 412 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.