PH01000148G0380's details annotation
1.Annotation
ICBR annotation: hhH-GPD superfamily base excision DNA repair protein
Blast result AT2G36490 : 8.00E-135
Blast annotation: demeter-like 1
2.Location
Scaffold: PH01000148
Strand: +
| Region | Start | End |
| gene | 255009 | 265186 |
| mRNA | 255009 | 265186 |
| exon | 255009 | 255065 |
| exon | 255330 | 255904 |
| exon | 256022 | 258214 |
| exon | 258902 | 258992 |
| exon | 259110 | 259999 |
| exon | 260088 | 260482 |
| exon | 260774 | 260853 |
| exon | 261191 | 261275 |
| exon | 261353 | 261444 |
| exon | 261763 | 261799 |
| exon | 261875 | 261957 |
| exon | 262473 | 262910 |
| exon | 262966 | 263093 |
| exon | 263302 | 263441 |
| exon | 263956 | 264021 |
| exon | 264154 | 264268 |
| exon | 264347 | 264385 |
| exon | 264557 | 265186 |
| CDS | 255040 | 255065 |
| CDS | 255330 | 255904 |
| CDS | 256022 | 258214 |
| CDS | 258902 | 258992 |
| CDS | 259110 | 259999 |
| CDS | 260088 | 260482 |
| CDS | 260774 | 260853 |
| CDS | 261191 | 261275 |
| CDS | 261353 | 261444 |
| CDS | 261763 | 261799 |
| CDS | 261875 | 261957 |
| CDS | 262473 | 262910 |
| CDS | 262966 | 263093 |
| CDS | 263302 | 263441 |
| CDS | 263956 | 264021 |
| CDS | 264154 | 264268 |
| CDS | 264347 | 264385 |
| CDS | 264557 | 264657 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000803 | DNA repair, nucleus, regulation_of_DNA-templated_transcription,_elongation histone modification, cell cycle, RLK-Pelle_LRR-V (from iTAK) SWI/SNF-BAF60b Transcription_Regulator(from iTAK) base-excision repair, transcription initiation, DNA-dependent, regulation of transcription from RNA polymerase II promoter, MYB_related Transcription_Regulator(from PlantTFDB) MYB-related Transcription_Regulator(from iTAK) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00730.24 | HhH-GPD | 1348 | 1476 |
| PF15629.5 | Perm-CXXC | 1714 | 1743 |
| PF15628.5 | RRM_DME | 1748 | 1825 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003824 | catalytic activity |
| GO:0004519 | endonuclease activity |
| GO:0006281 | DNA repair |
| GO:0006284 | base-excision repair |
| GO:0051539 | 4 iron, 4 sulfur cluster binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.