PH01000150G0790's details annotation
1.Annotation
ICBR annotation: RNA methyltransferase, TrmH family protein, putative, expressed
Blast result AT5G26880 : 3.00E-38
Blast annotation: AGAMOUS-like 26
2.Location
Scaffold: PH01000150
Strand: +
| Region | Start | End |
| gene | 525141 | 528834 |
| mRNA | 525141 | 528834 |
| exon | 525141 | 525961 |
| exon | 526037 | 526137 |
| exon | 526978 | 527022 |
| exon | 527103 | 527156 |
| exon | 527486 | 527641 |
| exon | 528027 | 528834 |
| CDS | 525844 | 525961 |
| CDS | 526037 | 526137 |
| CDS | 526978 | 527022 |
| CDS | 527103 | 527156 |
| CDS | 527486 | 527641 |
| CDS | 528027 | 528305 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00588.18 | SpoU_methylase | 157 | 218 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003723 | RNA binding |
| GO:0006396 | RNA processing |
| GO:0008173 | RNA methyltransferase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.