PH01000151G1060's details annotation
1.Annotation
ICBR annotation: CGMC_MAPKCGMC_2.1 - CGMC includes CDA, MAPK, GSK3, and CLKC kinases, expressed
Blast result AT5G19010 : 2.00E-104
Blast annotation: mitogen-activated protein kinase 16
2.Location
Scaffold: PH01000151
Strand: -
| Region | Start | End |
| gene | 808404 | 813421 |
| mRNA | 808404 | 813421 |
| exon | 808404 | 809397 |
| exon | 811101 | 811240 |
| exon | 811834 | 812045 |
| exon | 812166 | 812321 |
| exon | 812403 | 812552 |
| exon | 813050 | 813421 |
| CDS | 809117 | 809397 |
| CDS | 811101 | 811240 |
| CDS | 811834 | 812045 |
| CDS | 812166 | 812321 |
| CDS | 812403 | 812552 |
| CDS | 813050 | 813052 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00069.24 | Pkinase | 1 | 110 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.