Annotation of co-expression genes

PH01000152G0810's details annotation

1.Annotation

ICBR annotation: protein kinase, putative, expressed

Blast result AT5G35980 : 0.00E+00
Blast annotation: yeast YAK1-related gene 1

2.Location

Scaffold: PH01000152
Strand: -

RegionStartEnd
gene508362519454
mRNA508362519454
exon508362509400
exon509490509728
exon510003510161
exon510239511026
exon511157511231
exon511752511826
exon512095512183
exon515049515148
exon515239515383
exon515608515671
exon515986516125
exon516225516307
exon516382516451
exon516541516650
exon516736516889
exon517295517494
exon518207519454
CDS509321509400
CDS509490509728
CDS510003510161
CDS510239511026
CDS511157511231
CDS511752511826
CDS512095512183
CDS515049515148
CDS515239515383
CDS515608515671
CDS515986516125
CDS516225516307
CDS516382516451
CDS516541516650
CDS516736516889
CDS517295517494
CDS518207518392

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00069.24Pkinase132285

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.