PH01000157G0210's details annotation
1.Annotation
ICBR annotation: Citrate transporter protein, putative, expressed
Blast result AT1G02260 : 4.00E-79
Blast annotation: Divalent ion symporter
2.Location
Scaffold: PH01000157
Strand: +
| Region | Start | End |
| gene | 164986 | 168168 |
| mRNA | 164986 | 168168 |
| exon | 164986 | 166534 |
| exon | 167216 | 168168 |
| CDS | 166003 | 166534 |
| CDS | 167216 | 167484 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000915 | UTP biosynthetic process, nucleoside_diphosphate_phosphorylation CTP biosynthetic process, GTP biosynthetic process, regulation of actin filament polymerization, nucleoside diphosphate kinase activity, cytoskeleton, Pyrimidine_metabolism Purine_metabolism |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF03600.15 | CitMHS | 29 | 202 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016021 | integral to membrane |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.