PH01000158G0660's details annotation
1.Annotation
ICBR annotation: FYVE zinc finger domain containing protein, expressed
Blast result AT3G43230 : 2.00E-137
Blast annotation: RING/FYVE/PHD-type zinc finger family protein
2.Location
Scaffold: PH01000158
Strand: +
| Region | Start | End |
| gene | 457204 | 460205 |
| mRNA | 457204 | 460205 |
| exon | 457204 | 459007 |
| exon | 459088 | 459288 |
| exon | 459756 | 459951 |
| exon | 460013 | 460205 |
| CDS | 458201 | 459007 |
| CDS | 459088 | 459288 |
| CDS | 459756 | 459951 |
| CDS | 460013 | 460065 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000866 | Regulation_of_autophagy autophagy, protein metabolic process, IWS1 Transcription_Regulator(from iTAK) transcription, DNA-dependent, MYB Transcription_Regulator(from PlantTFDB) |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01363.20 | FYVE | 148 | 213 |
| PF04366.11 | Ysc84 | 330 | 401 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0046872 | metal ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.