Annotation of co-expression genes

PH01000159G0640's details annotation

1.Annotation

ICBR annotation: WD domain, G-beta repeat domain containing protein, expressed

Blast result AT1G10580 : 0.00E+00
Blast annotation: Transducin/WD40 repeat-like superfamily protein

2.Location

Scaffold: PH01000159
Strand: -

RegionStartEnd
gene511445516672
mRNA511445516672
exon511445511705
exon512232512329
exon514639516672
CDS511679511705
CDS512232512329
CDS514639515803

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000131GT13 GlycosylTransferases
vacuolar_proton-transporting_V-type_ATPase,_V0_domain
Golgi membrane,
proton-transporting V-type ATPase, V0 domain,
coexpression networkCFinderM001745GT13 GlycosylTransferases
Golgi membrane,
mannosyl-oligosaccharide 1,2-alpha-mannosidase activity,
N-Glycan_biosynthesis
Glycerolipid_metabolism
Various_types_of_N-glycan_biosynthesis
Glycerophospholipid_metabolism
transferase activity, transferring acyl groups,
acetylglucosaminyltransferase activity,
protein glycosylation,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00400.31WD40112150
PF00400.31WD40156193
PF00400.31WD40241278
PF00400.31WD40334369

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Spliceosomepre-mRNA-processing factor 17ko03041K12816

10.Gene Ontology

GO AccessionGO Annotation
GO:0005515protein binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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