PH01000162G0410's details annotation
1.Annotation
ICBR annotation: GTPase of unknown function domain containing protein, putative, expressed
Blast result AT1G08410 : 8.00E-174
Blast annotation: P-loop containing nucleoside triphosphate hydrolases superfamily protein
2.Location
Scaffold: PH01000162
Strand: -
| Region | Start | End |
| gene | 295022 | 300797 |
| mRNA | 295022 | 300797 |
| exon | 295022 | 296708 |
| exon | 296801 | 296880 |
| exon | 298217 | 298273 |
| exon | 298627 | 298720 |
| exon | 299030 | 299116 |
| exon | 299211 | 299300 |
| exon | 299518 | 300797 |
| CDS | 295586 | 296708 |
| CDS | 296801 | 296880 |
| CDS | 298217 | 298273 |
| CDS | 298627 | 298720 |
| CDS | 299030 | 299116 |
| CDS | 299211 | 299300 |
| CDS | 299518 | 299657 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01926.22 | MMR_HSR1 | 278 | 344 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome biogenesis in eukaryotes | large subunit GTPase 1 [EC:3.6.1.-] | ko03008 | K14539 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005525 | GTP binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.