PH01000164G0270's details annotation
1.Annotation
ICBR annotation: MATE efflux family protein, putative, expressed
Blast result AT5G52450 : 2.00E-122
Blast annotation: MATE efflux family protein
2.Location
Scaffold: PH01000164
Strand: -
| Region | Start | End |
| gene | 138860 | 143356 |
| mRNA | 138860 | 143356 |
| exon | 138860 | 139570 |
| exon | 140045 | 140131 |
| exon | 140223 | 140341 |
| exon | 140892 | 141130 |
| exon | 141573 | 141664 |
| exon | 141872 | 142357 |
| exon | 142840 | 143356 |
| CDS | 139508 | 139570 |
| CDS | 140045 | 140131 |
| CDS | 140223 | 140341 |
| CDS | 140892 | 141130 |
| CDS | 141573 | 141664 |
| CDS | 141872 | 142357 |
| CDS | 142840 | 143121 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01554.17 | MatE | 49 | 208 |
| PF01554.17 | MatE | 285 | 395 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006855 | drug transmembrane transport |
| GO:0015238 | drug transmembrane transporter activity |
| GO:0015297 | antiporter activity |
| GO:0016020 | membrane |
| GO:0055085 | transmembrane transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.