Annotation of co-expression genes

PH01000165G0210's details annotation

1.Annotation

ICBR annotation: MDR-like ABC transporter, putative, expressed

Blast result AT1G02520 : 0
Blast annotation: P-glycoprotein 11

2.Location

Scaffold: PH01000165
Strand: -

RegionStartEnd
gene124418134251
mRNA124418134251
exon124418127399
exon127461127613
exon128024128287
exon128369128418
exon128590128635
exon128730128958
exon129057129174
exon129298129702
exon129790129948
exon130046130064
exon130156130430
exon130514130653
exon131292131393
exon131515131567
exon131615131836
exon132079132280
exon133557133636
exon134026134251
CDS126959127399
CDS127461127613
CDS128024128287
CDS128369128418
CDS128590128635
CDS128730128958
CDS129057129174
CDS129298129702
CDS129790129948
CDS130046130064
CDS130156130430
CDS130514130653
CDS131292131393
CDS131515131567
CDS131615131836
CDS132079132280
CDS133557133636
CDS134026134103

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00664.22ABC_membrane47197
PF00005.26ABC_tran291377
PF00664.22ABC_membrane561709
PF00005.26ABC_tran804933

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0006810transport
GO:0016021integral to membrane
GO:0016887ATPase activity
GO:0017111nucleoside-triphosphatase activity
GO:0042626ATPase activity, coupled to transmembrane movement of substances
GO:0055085transmembrane transport

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.