PH01000165G1310's details annotation
1.Annotation
ICBR annotation: vesicle transport v-SNARE protein, putative, expressed
Blast result AT5G39510 : 1.60E-60
Blast annotation: Vesicle transport v-SNARE family protein
2.Location
Scaffold: PH01000165
Strand: +
| Region | Start | End |
| gene | 818676 | 823532 |
| mRNA | 818676 | 823532 |
| exon | 818676 | 819140 |
| exon | 819237 | 819292 |
| exon | 819443 | 819631 |
| exon | 821495 | 821665 |
| exon | 822464 | 823532 |
| CDS | 819047 | 819140 |
| CDS | 819237 | 819292 |
| CDS | 819443 | 819631 |
| CDS | 821495 | 821665 |
| CDS | 822464 | 822808 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF05008.14 | V-SNARE | 12 | 89 |
| PF12352.7 | V-SNARE_C | 127 | 174 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0006886 | intracellular protein transport |
| GO:0016020 | membrane |
| GO:0016192 | vesicle-mediated transport |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.