PH01000168G0040's details annotation
1.Annotation
ICBR annotation: zinc finger family protein, putative, expressed
Blast result AT2G05160 : 5.90E-78
Blast annotation: CCCH-type zinc fingerfamily protein with RNA-binding domain
2.Location
Scaffold: PH01000168
Strand: -
| Region | Start | End |
| gene | 39673 | 43064 |
| mRNA | 39673 | 43064 |
| exon | 39673 | 40196 |
| exon | 40304 | 40418 |
| exon | 40504 | 40674 |
| exon | 40762 | 40841 |
| exon | 40936 | 41115 |
| exon | 41241 | 41411 |
| exon | 41507 | 42040 |
| exon | 42076 | 43064 |
| CDS | 40118 | 40196 |
| CDS | 40304 | 40418 |
| CDS | 40504 | 40674 |
| CDS | 40762 | 40841 |
| CDS | 40936 | 41115 |
| CDS | 41241 | 41411 |
| CDS | 41507 | 42040 |
| CDS | 42076 | 42413 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF12872.6 | OST-HTH | 220 | 298 |
| PF00076.21 | RRM_1 | 337 | 393 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000166 | nucleotide binding |
| GO:0003676 | nucleic acid binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.