PH01000169G0330's details annotation
1.Annotation
ICBR annotation: initiation factor 2 subunit family domain containing protein, expressed
Blast result AT5G38640 : 5.80E-84
Blast annotation: NagB/RpiA/CoA transferase-like superfamily protein
2.Location
Scaffold: PH01000169
Strand: +
| Region | Start | End |
| gene | 214383 | 219018 |
| mRNA | 214383 | 219018 |
| exon | 214383 | 214513 |
| exon | 215083 | 215203 |
| exon | 215965 | 216003 |
| exon | 216343 | 216539 |
| exon | 217038 | 219018 |
| CDS | 214460 | 214513 |
| CDS | 215083 | 215203 |
| CDS | 215965 | 216003 |
| CDS | 216343 | 216539 |
| CDS | 217038 | 217631 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01008.16 | IF-2B | 147 | 333 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0044237 | cellular metabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.