PH01000170G0510's details annotation
1.Annotation
ICBR annotation: fatty acid hydroxylase, putative, expressed
Blast result AT4G22756 : 5.00E-123
Blast annotation: sterol C4-methyl oxidase 1-2
2.Location
Scaffold: PH01000170
Strand: +
| Region | Start | End |
| gene | 301575 | 305923 |
| mRNA | 301575 | 305923 |
| exon | 301575 | 301986 |
| exon | 302396 | 302718 |
| exon | 304856 | 305003 |
| exon | 305088 | 305120 |
| exon | 305282 | 305923 |
| CDS | 301657 | 301986 |
| CDS | 302396 | 302718 |
| CDS | 304856 | 305003 |
| CDS | 305088 | 305120 |
| CDS | 305282 | 305353 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04116.12 | FA_hydroxylase | 131 | 265 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Steroid biosynthesis | 4,4-dimethyl-9beta,19-cyclopropylsterol-4alpha-methyl oxidase [EC:1.14.13.72] | ko00100 | K14423 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005506 | iron ion binding |
| GO:0006633 | fatty acid biosynthetic process |
| GO:0016491 | oxidoreductase activity |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.