PH01000170G0520's details annotation
1.Annotation
ICBR annotation: zinc knuckle domain containing protein, expressed
Blast result AT1G75560 : 1.70E-78
Blast annotation: zinc knuckle (CCHC-type) family protein
2.Location
Scaffold: PH01000170
Strand: -
| Region | Start | End |
| gene | 306295 | 309974 |
| mRNA | 306295 | 309974 |
| exon | 306295 | 307167 |
| exon | 307853 | 307948 |
| exon | 308600 | 308669 |
| exon | 309225 | 309974 |
| CDS | 306603 | 307167 |
| CDS | 307853 | 307948 |
| CDS | 308600 | 308669 |
| CDS | 309225 | 309435 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00098.22 | zf-CCHC | 100 | 115 |
| PF00098.22 | zf-CCHC | 118 | 133 |
| PF00098.22 | zf-CCHC | 137 | 153 |
| PF00098.22 | zf-CCHC | 156 | 171 |
| PF00098.22 | zf-CCHC | 182 | 198 |
| PF00098.22 | zf-CCHC | 201 | 217 |
| PF00098.22 | zf-CCHC | 220 | 236 |
| PF00098.22 | zf-CCHC | 264 | 279 |
| PF00098.22 | zf-CCHC | 285 | 301 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003676 | nucleic acid binding |
| GO:0008270 | zinc ion binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.