Annotation of co-expression genes

PH01000171G0690's details annotation

1.Annotation

ICBR annotation: nucleoside diphosphate kinase, putative, expressed

Blast result AT4G09320 : 4.00E-69
Blast annotation: Nucleoside diphosphate kinase family protein

2.Location

Scaffold: PH01000171
Strand: +

RegionStartEnd
gene542875545268
mRNA542875545268
exon542875543042
exon543163543211
exon543492543723
exon544755545268
CDS542986543042
CDS543163543211
CDS543492543723
CDS544755544872

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00334.18NDK4135

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Purine metabolismnucleoside-diphosphate kinase [EC:2.7.4.6]ko00230K00940
Pyrimidine metabolismnucleoside-diphosphate kinase [EC:2.7.4.6]ko00240K00940

10.Gene Ontology

GO AccessionGO Annotation
GO:0004550nucleoside diphosphate kinase activity
GO:0005524ATP binding
GO:0006165nucleoside diphosphate phosphorylation
GO:0006183GTP biosynthetic process
GO:0006228UTP biosynthetic process
GO:0006241CTP biosynthetic process

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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