Annotation of co-expression genes

PH01000174G1300's details annotation

1.Annotation

ICBR annotation: protein kinase, putative, expressed

Blast result AT3G03770 : 2.00E-112
Blast annotation: Leucine-rich repeat protein kinase family protein

2.Location

Scaffold: PH01000174
Strand: -

RegionStartEnd
gene864217869299
mRNA864217869299
exon864217864779
exon864879864990
exon865114865145
exon865255865463
exon865742865823
exon866501866906
exon867083869299
CDS864495864779
CDS864879864990
CDS865114865145
CDS865255865463
CDS865742865823
CDS866501866906
CDS867083868533

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000888phosphatidylinositol metabolic process,
phosphatidylinositol phosphate kinase activity,
Inositol_phosphate_metabolism
Phosphatidylinositol_signaling_system
RLK-Pelle_LRR-VI-1 (from iTAK)
1-phosphatidylinositol-4-phosphate 5-kinase activity,
cellular protein metabolic process,
Phagosome
Endocytosis
ATP binding,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF13855.5LRR_8155214
PF07714.16Pkinase_Tyr649819

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.