Annotation of co-expression genes

PH01000184G1040's details annotation

1.Annotation

ICBR annotation: inositol-1-monophosphatase, putative, expressed

Blast result AT3G02870 : 6.00E-108
Blast annotation: Inositol monophosphatase family protein

2.Location

Scaffold: PH01000184
Strand: -

RegionStartEnd
gene767278771289
mRNA767278771289
exon767278768345
exon768449768505
exon768594768694
exon768781768849
exon769937769980
exon770110770164
exon770371770455
exon770570770757
exon770854770904
exon771065771289
CDS768249768345
CDS768449768505
CDS768594768694
CDS768781768849
CDS769937769980
CDS770110770164
CDS770371770455
CDS770570770757
CDS770854770904
CDS771065771121

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00459.24Inositol_P4263

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
Ascorbate and aldarate metabolisminositol-phosphate phosphatase / L-galactose 1-phosphate phosphat[EC:3.1.3.25;EC:3.1.3.-]ko00053K10047
Inositol phosphate metabolisminositol-phosphate phosphatase / L-galactose 1-phosphate phosphat[EC:3.1.3.25;EC:3.1.3.-]ko00562K10047
Phosphatidylinositol signaling systeminositol-phosphate phosphatase / L-galactose 1-phosphate phosphat[EC:3.1.3.25;EC:3.1.3.-]ko04070K10047

10.Gene Ontology

GO AccessionGO Annotation
GO:0046854phosphatidylinositol phosphorylation

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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