Annotation of co-expression genes

PH01000188G0440's details annotation

1.Annotation

ICBR annotation: homeobox associated leucine zipper, putative, expressed

Blast result AT1G69780 : 1.30E-65
Blast annotation: Homeobox-leucine zipper protein family

2.Location

Scaffold: PH01000188
Strand: -

RegionStartEnd
gene305958308449
mRNA305958308449
exon305958306782
exon307148308449
CDS306405306782
CDS307148307504

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000085mitochondrial inner membrane,
HD-ZIP Transcription_Regulator(from PlantTFDB)
HB-HD-ZIP Transcription_Regulator(from iTAK)

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)HB-HD-ZIP
Transcription_Regulator(from PlantTFDB)HD-ZIP

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00046.28Homeobox3184
PF02183.17HALZ86126

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000976transcription regulatory region sequence-specific DNA binding
GO:0003677DNA binding
GO:0003700sequence-specific DNA binding transcription factor activity
GO:0005634nucleus
GO:0006355regulation of transcription, DNA-dependent
GO:0043565sequence-specific DNA binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.