PH01000191G0780's details annotation
1.Annotation
ICBR annotation: peptidase, T1 family, putative, expressed
Blast result AT1G56450 : 8.00E-102
Blast annotation: 20S proteasome beta subunit G1
2.Location
Scaffold: PH01000191
Strand: -
| Region | Start | End |
| gene | 512082 | 514533 |
| mRNA | 512082 | 514533 |
| exon | 512082 | 512384 |
| exon | 512508 | 512693 |
| exon | 512782 | 512953 |
| exon | 513043 | 513172 |
| exon | 513248 | 513324 |
| exon | 514297 | 514376 |
| exon | 514477 | 514533 |
| CDS | 512271 | 512384 |
| CDS | 512508 | 512693 |
| CDS | 512782 | 512953 |
| CDS | 513043 | 513172 |
| CDS | 513248 | 513324 |
| CDS | 514297 | 514376 |
| CDS | 514477 | 514482 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000984 | proteasome core complex, threonine-type endopeptidase activity, endopeptidase activity, proteolysis involved in cellular protein catabolic process, Proteasome thiol oxidase activity, proteasome core complex, alpha-subunit complex, Oxidative_phosphorylation |
| coexpression network | CFinderM001065 | threonine-type endopeptidase activity, endopeptidase activity, proteasome core complex, proteolysis involved in cellular protein catabolic process, Proteasome thiol oxidase activity, Protein_processing_in_endoplasmic_reticulum proteasome core complex, alpha-subunit complex, Retinol_metabolism |
| coexpression network | CFinderM001407 | threonine-type endopeptidase activity, endopeptidase activity, proteolysis involved in cellular protein catabolic process, proteasome core complex, Proteasome RLK-Pelle_LRR-XIV (from iTAK) Protein_processing_in_endoplasmic_reticulum proteasome core complex, alpha-subunit complex, Protein_export |
| coexpression network | CFinderM001723 | Proteasome proteolysis involved in cellular protein catabolic process, protein catabolic process, proteasome core complex, mRNA_surveillance_pathway |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00227.25 | Proteasome | 34 | 220 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Proteasome | 20S proteasome subunit beta 7 [EC:3.4.25.1] | ko03051 | K02736 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004175 | endopeptidase activity |
| GO:0004298 | threonine-type endopeptidase activity |
| GO:0005839 | proteasome core complex |
| GO:0051603 | proteolysis involved in cellular protein catabolic process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.