Annotation of co-expression genes

PH01000200G0520's details annotation

1.Annotation

ICBR annotation: helix-loop-helix DNA-binding protein, putative, expressed

Blast result AT1G64625 : 8.70E-52
Blast annotation: Serine/threonine-protein kinase WNK (With No Lysine)-related

2.Location

Scaffold: PH01000200
Strand: +

RegionStartEnd
gene426553433014
mRNA426553433014
exon426553427034
exon427800427946
exon428553428658
exon429008429049
exon429191429250
exon429497431080
exon431172431273
exon431389431541
exon431627431752
exon431835433014
CDS426952427034
CDS427800427946
CDS428553428658
CDS429008429049
CDS429191429250
CDS429497431080
CDS431172431273
CDS431389431541
CDS431627431752
CDS431835432017

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000016protein phosphorylation,
protein kinase activity,
transferase activity, transferring phosphorus-containing groups,
protein serine/threonine kinase activity,
ATP binding,
RLK-Pelle_LRR-XII-1 (from iTAK)
RLK-Pelle_DLSV (from iTAK)
RLK-Pelle_WAK (from iTAK)
ADP_binding
polysaccharide_binding
transmembrane_transporter_activity
WRKY Transcription_Regulator(from PlantTFDB)
recognition of pollen,
transmembrane transport,
defense response,
RLK-Pelle_L-LEC (from iTAK)
membrane,
integral to membrane,
RLK-Pelle_SD-2b (from iTAK)
RLK-Pelle_WAK_LRK10L-1 (from iTAK)
ATPase activity,
substrate-specific transmembrane transporter activity,
RLK-Pelle_LRR-XI-1 (from iTAK)
6-phosphofructokinase complex,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF14215.5bHLH-MYC_N68161

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0046983protein dimerization activity

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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