PH01000205G0570's details annotation
1.Annotation
ICBR annotation: ATP-dependent RNA helicase, putative, expressed
Blast result AT1G27900 : 1.70E-62
Blast annotation: RNA helicase family protein
2.Location
Scaffold: PH01000205
Strand: -
| Region | Start | End |
| gene | 460228 | 467590 |
| mRNA | 460228 | 467590 |
| exon | 460228 | 460693 |
| exon | 460999 | 461047 |
| exon | 461268 | 461443 |
| exon | 462075 | 462232 |
| exon | 464325 | 464394 |
| exon | 465367 | 465508 |
| exon | 465993 | 466059 |
| exon | 466713 | 467590 |
| CDS | 460673 | 460693 |
| CDS | 460999 | 461047 |
| CDS | 461268 | 461443 |
| CDS | 462075 | 462232 |
| CDS | 464325 | 464394 |
| CDS | 465367 | 465508 |
| CDS | 465993 | 466059 |
| CDS | 466713 | 466890 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001865 | mitochondrial respiratory chain complex IV, mitochondrial inner membrane, cytochrome-c oxidase activity, Oxidative_phosphorylation |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07717.15 | OB_NTP_bind | 172 | 253 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.