PH01000207G0720's details annotation
1.Annotation
ICBR annotation: dihydrolipoyl dehydrogenase 1, mitochondrial precursor, putative, expressed
Blast result AT1G48030 : 0.00E+00
Blast annotation: mitochondrial lipoamide dehydrogenase 1
2.Location
Scaffold: PH01000207
Strand: -
| Region | Start | End |
| gene | 519751 | 525520 |
| mRNA | 519751 | 525520 |
| exon | 519751 | 521630 |
| exon | 522791 | 522895 |
| exon | 523058 | 523375 |
| exon | 524797 | 524988 |
| exon | 525084 | 525191 |
| exon | 525274 | 525520 |
| CDS | 520380 | 521630 |
| CDS | 522791 | 522895 |
| CDS | 523058 | 523375 |
| CDS | 524797 | 524988 |
| CDS | 525084 | 525191 |
| CDS | 525274 | 525423 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01762.20 | Galactosyl_T | 1 | 103 |
| PF07992.13 | Pyr_redox_2 | 210 | 569 |
| PF02852.21 | Pyr_redox_dim | 588 | 696 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Glycolysis / Gluconeogenesis | dihydrolipoamide dehydrogenase [EC:1.8.1.4] | ko00010 | K00382 |
| Citrate cycle (TCA cycle) | dihydrolipoamide dehydrogenase [EC:1.8.1.4] | ko00020 | K00382 |
| Pyruvate metabolism | dihydrolipoamide dehydrogenase [EC:1.8.1.4] | ko00620 | K00382 |
| 297 Glycine, serine and threonine metabolism | dihydrolipoamide dehydrogenase [EC:1.8.1.4] | K00382 | |
| 286 Valine, leucine and isoleucine degradation | dihydrolipoamide dehydrogenase [EC:1.8.1.4] | K00382 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004148 | dihydrolipoyl dehydrogenase activity |
| GO:0005737 | cytoplasm |
| GO:0006486 | protein glycosylation |
| GO:0008378 | galactosyltransferase activity |
| GO:0016020 | membrane |
| GO:0016491 | oxidoreductase activity |
| GO:0016668 | oxidoreductase activity, acting on a sulfur group of donors, NAD(P) as acceptor |
| GO:0045454 | cell redox homeostasis |
| GO:0050660 | flavin adenine dinucleotide binding |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.