PH01000210G0170's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G06005 : 1.00E-108
Blast annotation: FRIGIDA interacting protein 1
2.Location
Scaffold: PH01000210
Strand: +
| Region | Start | End |
| gene | 119974 | 129615 |
| mRNA | 119974 | 129615 |
| exon | 119974 | 120999 |
| exon | 121819 | 121906 |
| exon | 122132 | 122240 |
| exon | 122371 | 122420 |
| exon | 122927 | 122993 |
| exon | 123946 | 124019 |
| exon | 124861 | 124927 |
| exon | 125218 | 125290 |
| exon | 126087 | 126142 |
| exon | 126507 | 126603 |
| exon | 126951 | 127032 |
| exon | 127457 | 127519 |
| exon | 127656 | 127715 |
| exon | 128289 | 128381 |
| exon | 128495 | 128557 |
| exon | 128652 | 129615 |
| CDS | 120935 | 120999 |
| CDS | 121819 | 121906 |
| CDS | 122132 | 122240 |
| CDS | 122371 | 122420 |
| CDS | 122927 | 122993 |
| CDS | 123946 | 124019 |
| CDS | 124861 | 124927 |
| CDS | 125218 | 125290 |
| CDS | 126087 | 126142 |
| CDS | 126507 | 126603 |
| CDS | 126951 | 127032 |
| CDS | 127457 | 127519 |
| CDS | 127656 | 127715 |
| CDS | 128289 | 128381 |
| CDS | 128495 | 128557 |
| CDS | 128652 | 128750 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF14802.5 | TMEM192 | 149 | 283 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.