PH01000210G1000's details annotation
1.Annotation
ICBR annotation: OsSub22 - Putative Subtilisin homologue, expressed
Blast result AT3G14067 : 3.70E-97
Blast annotation: Subtilase family protein
2.Location
Scaffold: PH01000210
Strand: -
| Region | Start | End |
| gene | 686953 | 691255 |
| mRNA | 686953 | 691255 |
| exon | 686953 | 687707 |
| exon | 687801 | 688281 |
| exon | 688507 | 688591 |
| exon | 688942 | 689977 |
| exon | 690322 | 691255 |
| CDS | 687402 | 687707 |
| CDS | 687801 | 688281 |
| CDS | 688507 | 688591 |
| CDS | 688942 | 689977 |
| CDS | 690322 | 690942 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF00082.21 | Peptidase_S8 | 57 | 402 |
| PF13961.5 | DUF4219 | 581 | 605 |
| PF14223.5 | Retrotran_gag_2 | 616 | 754 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004252 | serine-type endopeptidase activity |
| GO:0006508 | proteolysis |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.