PH01000215G0800's details annotation
1.Annotation
ICBR annotation: NAD dependent epimerase/dehydratase family protein, putative, expressed
Blast result AT2G33630 : 0.00E+00
Blast annotation: NAD(P)-binding Rossmann-fold superfamily protein
2.Location
Scaffold: PH01000215
Strand: +
| Region | Start | End |
| gene | 539180 | 546334 |
| mRNA | 539180 | 546334 |
| exon | 539180 | 540175 |
| exon | 540703 | 541045 |
| exon | 541290 | 541561 |
| exon | 542922 | 543121 |
| exon | 543559 | 543922 |
| exon | 546058 | 546334 |
| CDS | 539986 | 540175 |
| CDS | 540703 | 541045 |
| CDS | 541290 | 541561 |
| CDS | 542922 | 543121 |
| CDS | 543559 | 543922 |
| CDS | 546058 | 546164 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01073.18 | 3Beta_HSD | 15 | 293 |
| PF14934.5 | DUF4499 | 389 | 467 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003854 | 3-beta-hydroxy-delta5-steroid dehydrogenase activity |
| GO:0006694 | steroid biosynthetic process |
| GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor |
| GO:0055114 | oxidation-reduction process |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.