PH01000216G0750's details annotation
1.Annotation
ICBR annotation: rRNA-processing protein FCF, putative, expressed
Blast result AT2G46230 : 2.40E-73
Blast annotation: PIN domain-like family protein
2.Location
Scaffold: PH01000216
Strand: -
| Region | Start | End |
| gene | 447137 | 451107 |
| mRNA | 447137 | 451107 |
| exon | 447137 | 447659 |
| exon | 448446 | 448524 |
| exon | 449472 | 449559 |
| exon | 449707 | 449779 |
| exon | 449900 | 449942 |
| exon | 450505 | 450610 |
| exon | 450706 | 450771 |
| exon | 450846 | 451107 |
| CDS | 447463 | 447659 |
| CDS | 448446 | 448524 |
| CDS | 449472 | 449559 |
| CDS | 449707 | 449779 |
| CDS | 449900 | 449942 |
| CDS | 450505 | 450610 |
| CDS | 450706 | 450771 |
| CDS | 450846 | 450919 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM001452 | 'de novo' IMP biosynthetic process, 5-(carboxyamino)imidazole_ribonucleotide_mutase_activity |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04900.11 | Fcf1 | 91 | 150 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Ribosome biogenesis in eukaryotes | U3 small nucleolar RNA-associated protein 24 | ko03008 | K14566 |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.