PH01000222G0180's details annotation
1.Annotation
ICBR annotation: auxin response factor 9, putative, expressed
Blast result AT1G59750 : 0.00E+00
Blast annotation: auxin response factor 1
2.Location
Scaffold: PH01000222
Strand: +
| Region | Start | End |
| gene | 140465 | 148140 |
| mRNA | 140465 | 148140 |
| exon | 140465 | 141845 |
| exon | 142531 | 142646 |
| exon | 142781 | 142876 |
| exon | 142998 | 143054 |
| exon | 143171 | 143320 |
| exon | 143434 | 143518 |
| exon | 143734 | 143824 |
| exon | 143967 | 144131 |
| exon | 144508 | 144627 |
| exon | 144716 | 144800 |
| exon | 144928 | 145096 |
| exon | 145264 | 145736 |
| exon | 145828 | 146018 |
| exon | 146140 | 146249 |
| exon | 147338 | 148140 |
| CDS | 141797 | 141845 |
| CDS | 142531 | 142646 |
| CDS | 142781 | 142876 |
| CDS | 142998 | 143054 |
| CDS | 143171 | 143320 |
| CDS | 143434 | 143518 |
| CDS | 143734 | 143824 |
| CDS | 143967 | 144131 |
| CDS | 144508 | 144627 |
| CDS | 144716 | 144800 |
| CDS | 144928 | 145096 |
| CDS | 145264 | 145736 |
| CDS | 145828 | 146018 |
| CDS | 146140 | 146249 |
| CDS | 147338 | 147633 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| Transcription_Regulator(from iTAK) | B3-ARF |
| Transcription_Regulator(from PlantTFDB) | ARF |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02362.20 | B3 | 127 | 227 |
| PF06507.12 | Auxin_resp | 253 | 338 |
| PF02309.15 | AUX_IAA | 545 | 639 |
| PF00646.32 | F-box | 668 | 706 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0003677 | DNA binding |
| GO:0005515 | protein binding |
| GO:0005634 | nucleus |
| GO:0006355 | regulation of transcription, DNA-dependent |
| GO:0009725 | response to hormone stimulus |
| GO:0046983 | protein dimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.