Annotation of co-expression genes

PH01000223G1160's details annotation

1.Annotation

ICBR annotation: homeodomain protein, putative, expressed

Blast result AT5G02030 : 1.60E-65
Blast annotation: POX (plant homeobox) family protein

2.Location

Scaffold: PH01000223
Strand: -

RegionStartEnd
gene805427810654
mRNA805427810654
exon805427806626
exon806746806806
exon808509808876
exon809690810654
CDS806033806626
CDS806746806806
CDS808509808876
CDS809690810418

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist 		Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networkCFinderM000191TALE Transcription_Regulator(from PlantTFDB)
HB-KNOX Transcription_Regulator(from iTAK)
regulation of transcription, DNA-dependent,
HB-BELL Transcription_Regulator(from iTAK)
protein complex,
nucleus,
microtubule,
AUX/IAA Transcription_Regulator(from iTAK)
Phagosome
selenium binding,
sequence-specific DNA binding,
structural constituent of cytoskeleton,
sequence-specific DNA binding transcription factor activity,
trehalose biosynthetic process,
microtubule-based process,
protein polymerization,
coexpression networkCFinderM000431Porphyrin_and_chlorophyll_metabolism
C2C2-Dof Transcription_Regulator(from iTAK)
HB-BELL Transcription_Regulator(from iTAK)
TRAF Transcription_Regulator(from iTAK)
Dof Transcription_Regulator(from PlantTFDB)
TALE Transcription_Regulator(from PlantTFDB)
oxygen-dependent protoporphyrinogen oxidase activity,

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
Transcription_Regulator(from iTAK)HB-BELL
Transcription_Regulator(from PlantTFDB)TALE

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF07526.10POX165293
PF05920.10Homeobox_KN358397

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0003677DNA binding
GO:0003700sequence-specific DNA binding transcription factor activity
GO:0006355regulation of transcription, DNA-dependent
GO:0043565sequence-specific DNA binding

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
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