PH01000225G0700's details annotation
1.Annotation
ICBR annotation: COBW domain containing protein, putative, expressed
Blast result AT1G80480 : 7.20E-95
Blast annotation: plastid transcriptionally active 17
2.Location
Scaffold: PH01000225
Strand: +
| Region | Start | End |
| gene | 408968 | 412006 |
| mRNA | 408968 | 412006 |
| exon | 408968 | 409509 |
| exon | 409873 | 409938 |
| exon | 410146 | 410326 |
| exon | 410430 | 410626 |
| exon | 410748 | 410798 |
| exon | 410886 | 411030 |
| exon | 411450 | 411529 |
| exon | 411660 | 411764 |
| exon | 411799 | 412006 |
| CDS | 409372 | 409509 |
| CDS | 409873 | 409938 |
| CDS | 410146 | 410326 |
| CDS | 410430 | 410626 |
| CDS | 410748 | 410798 |
| CDS | 410886 | 411030 |
| CDS | 411450 | 411529 |
| CDS | 411660 | 411764 |
| CDS | 411799 | 411918 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF02492.18 | cobW | 34 | 219 |
| PF07683.13 | CobW_C | 271 | 330 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| null | null |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.