PH01000229G0390's details annotation
1.Annotation
ICBR annotation: expressed_protein
Blast result AT2G19880 : 0.00E+00
Blast annotation: Nucleotide-diphospho-sugar transferases superfamily protein
2.Location
Scaffold: PH01000229
Strand: +
| Region | Start | End |
| gene | 254395 | 270192 |
| mRNA | 254395 | 270192 |
| exon | 254395 | 256416 |
| exon | 257093 | 257148 |
| exon | 257267 | 257441 |
| exon | 257521 | 257622 |
| exon | 257728 | 257799 |
| exon | 258283 | 258399 |
| exon | 258477 | 258554 |
| exon | 259344 | 259440 |
| exon | 259563 | 259779 |
| exon | 259900 | 260108 |
| exon | 260306 | 260451 |
| exon | 260549 | 260671 |
| exon | 261068 | 261114 |
| exon | 263814 | 263871 |
| exon | 264049 | 264132 |
| exon | 264492 | 264563 |
| exon | 264725 | 264826 |
| exon | 264882 | 264998 |
| exon | 267255 | 267290 |
| exon | 267550 | 267634 |
| exon | 267975 | 268057 |
| exon | 268148 | 268273 |
| exon | 268849 | 268977 |
| exon | 269300 | 269416 |
| exon | 269506 | 269562 |
| exon | 269866 | 270192 |
| CDS | 256336 | 256416 |
| CDS | 257093 | 257148 |
| CDS | 257267 | 257441 |
| CDS | 257521 | 257622 |
| CDS | 257728 | 257799 |
| CDS | 258283 | 258399 |
| CDS | 258477 | 258554 |
| CDS | 259344 | 259440 |
| CDS | 259563 | 259779 |
| CDS | 259900 | 260108 |
| CDS | 260306 | 260451 |
| CDS | 260549 | 260671 |
| CDS | 261068 | 261114 |
| CDS | 263814 | 263871 |
| CDS | 264049 | 264132 |
| CDS | 264492 | 264563 |
| CDS | 264725 | 264826 |
| CDS | 264882 | 264998 |
| CDS | 267255 | 267290 |
| CDS | 267550 | 267634 |
| CDS | 267975 | 268057 |
| CDS | 268148 | 268273 |
| CDS | 268849 | 268977 |
| CDS | 269300 | 269416 |
| CDS | 269506 | 269562 |
| CDS | 269866 | 269964 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF13506.5 | Glyco_transf_21 | 144 | 230 |
| PF00069.24 | Pkinase | 693 | 781 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0004672 | protein kinase activity |
| GO:0005524 | ATP binding |
| GO:0006468 | protein phosphorylation |
| GO:0016757 | transferase activity, transferring glycosyl groups |
| GO:0016772 | transferase activity, transferring phosphorus-containing groups |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.