Annotation of co-expression genes

PH01000229G1290's details annotation

1.Annotation

ICBR annotation: multidrug resistance-associated protein, putative, expressed

Blast result AT3G13080 : 0
Blast annotation: multidrug resistance-associated protein 3

2.Location

Scaffold: PH01000229
Strand: +

RegionStartEnd
gene801605807883
mRNA801605807883
exon801605802731
exon802818804265
exon804554804640
exon804862805449
exon805536805700
exon805777806071
exon806281806801
exon806976807039
exon807139807378
exon807440807883
CDS801909802731
CDS802818804265
CDS804554804640
CDS804862805449
CDS805536805700
CDS805777806071
CDS806281806801
CDS806976807039
CDS807139807378
CDS807440807624

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction null
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF00664.22ABC_membrane269535
PF00005.26ABC_tran614744
PF00664.22ABC_membrane8941128
PF00005.26ABC_tran12181366

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0000166nucleotide binding
GO:0005524ATP binding
GO:0006810transport
GO:0016021integral to membrane
GO:0016887ATPase activity
GO:0017111nucleoside-triphosphatase activity
GO:0042626ATPase activity, coupled to transmembrane movement of substances
GO:0055085transmembrane transport

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.