PH01000233G1010's details annotation
1.Annotation
ICBR annotation: ATGRIP/GRIP, putative, expressed
Blast result AT5G66030 : 5.30E-22
Blast annotation: Golgi-localized GRIP domain-containing protein
2.Location
Scaffold: PH01000233
Strand: -
| Region | Start | End |
| gene | 710144 | 715775 |
| mRNA | 710144 | 715775 |
| exon | 710144 | 710327 |
| exon | 711294 | 711352 |
| exon | 711434 | 711539 |
| exon | 713673 | 713720 |
| exon | 713801 | 713872 |
| exon | 714281 | 714333 |
| exon | 714425 | 714452 |
| exon | 714858 | 714951 |
| exon | 715630 | 715775 |
| CDS | 710208 | 710327 |
| CDS | 711294 | 711352 |
| CDS | 711434 | 711539 |
| CDS | 713673 | 713720 |
| CDS | 713801 | 713872 |
| CDS | 714281 | 714333 |
| CDS | 714425 | 714452 |
| CDS | 714858 | 714951 |
| CDS | 715630 | 715706 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01465.19 | GRIP | 143 | 180 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000042 | protein targeting to Golgi |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.