Annotation of co-expression genes

PH01000234G0890's details annotation

1.Annotation

ICBR annotation: BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative, expressed

Blast result AT1G71830 : 0
Blast annotation: somatic embryogenesis receptor-like kinase 1

2.Location

Scaffold: PH01000234
Strand: +

RegionStartEnd
gene553190559754
mRNA553190559754
exon553190553923
exon554872555004
exon555090555161
exon555988556051
exon556588556664
exon556907557022
exon557127557255
exon557338557679
exon557811558205
exon558595559754
CDS553833553923
CDS554872555004
CDS555090555161
CDS555988556051
CDS556588556664
CDS556907557022
CDS557127557255
CDS557338557679
CDS557811558205
CDS558595558906

UCSC genome browser

3.Network

Co-expression Network CategoryGlobal NetworkConditional Network
Co-expression Positive Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Co-expression Negative Top300 PCC genelist

MR network genelist
Top300 PCC genelist

MR network genelist
Predict protein-portein interaction details
miRNA-targets relationshipnull
 

4.Functional module

MethodModule IDFunction Annotation
coexpression networknullnull

5.Cis-elements

Details in 3kb promoter region

6.Expression profilings


7.Gene family

CategoryFamily
nullnull

8.Protein domain

Pfam AccessionPfam AnnotationAlignment StartAlignment Start
PF08263.11LRRNT_22767
PF00069.24Pkinase255526

9.KEGG Pathway

PathwayKEGG OrthologPathway IDKO
nullnullnullnull

10.Gene Ontology

GO AccessionGO Annotation
GO:0004672protein kinase activity
GO:0004674protein serine/threonine kinase activity
GO:0005524ATP binding
GO:0006468protein phosphorylation
GO:0016772transferase activity, transferring phosphorus-containing groups

Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.