PH01000235G0950's details annotation
1.Annotation
ICBR annotation: nucleotide-sugar transporter family protein, putative, expressed
Blast result AT3G59360 : 2.00E-137
Blast annotation: UDP-galactose transporter 6
2.Location
Scaffold: PH01000235
Strand: +
| Region | Start | End |
| gene | 653765 | 668010 |
| mRNA | 653765 | 668010 |
| exon | 653765 | 654461 |
| exon | 654636 | 654733 |
| exon | 658191 | 658385 |
| exon | 659927 | 660043 |
| exon | 660543 | 660659 |
| exon | 660937 | 660993 |
| exon | 661344 | 661421 |
| exon | 661580 | 661624 |
| exon | 661909 | 661968 |
| exon | 662204 | 662326 |
| exon | 662984 | 663061 |
| exon | 664782 | 664851 |
| exon | 665447 | 665554 |
| exon | 666931 | 667064 |
| exon | 667150 | 667220 |
| exon | 667444 | 667495 |
| exon | 667764 | 668010 |
| CDS | 654080 | 654461 |
| CDS | 654636 | 654733 |
| CDS | 658191 | 658385 |
| CDS | 659927 | 660043 |
| CDS | 660543 | 660659 |
| CDS | 660937 | 660993 |
| CDS | 661344 | 661421 |
| CDS | 661580 | 661624 |
| CDS | 661909 | 661968 |
| CDS | 662204 | 662326 |
| CDS | 662984 | 663061 |
| CDS | 664782 | 664851 |
| CDS | 665447 | 665554 |
| CDS | 666931 | 667064 |
| CDS | 667150 | 667220 |
| CDS | 667444 | 667495 |
| CDS | 667764 | 667829 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF07939.10 | DUF1685 | 57 | 110 |
| PF04142.14 | Nuc_sug_transp | 277 | 555 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0000139 | Golgi membrane |
| GO:0005351 | sugar:hydrogen symporter activity |
| GO:0008643 | carbohydrate transport |
| GO:0016021 | integral to membrane |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.