PH01000238G0750's details annotation
1.Annotation
ICBR annotation: mov34/MPN/PAD-1 family protein, expressed
Blast result AT4G16144 : 1.50E-96
Blast annotation: associated molecule with the SH3 domain of STAM 3
2.Location
Scaffold: PH01000238
Strand: +
| Region | Start | End |
| gene | 580235 | 590966 |
| mRNA | 580235 | 590966 |
| exon | 580235 | 583268 |
| exon | 583512 | 583576 |
| exon | 583944 | 584088 |
| exon | 584219 | 584325 |
| exon | 586269 | 586374 |
| exon | 586471 | 586517 |
| exon | 587875 | 588199 |
| exon | 588361 | 588450 |
| exon | 588526 | 588588 |
| exon | 588726 | 588800 |
| exon | 589616 | 589678 |
| exon | 590321 | 590966 |
| CDS | 583146 | 583268 |
| CDS | 583512 | 583576 |
| CDS | 583944 | 584088 |
| CDS | 584219 | 584325 |
| CDS | 586269 | 586374 |
| CDS | 586471 | 586517 |
| CDS | 587875 | 588199 |
| CDS | 588361 | 588450 |
| CDS | 588526 | 588588 |
| CDS | 588726 | 588800 |
| CDS | 589616 | 589678 |
| CDS | 590321 | 590398 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | CFinderM000341 | exosome_(RNase_complex) COP9_signalosome |
| coexpression network | CFinderM001805 | Golgi vesicle transport, vesicle-mediated transport, Spliceosome |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01398.20 | JAB | 301 | 407 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| null | null | null | null |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005515 | protein binding |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.