PH01000240G0480's details annotation
1.Annotation
ICBR annotation: transcription initiation factor TFIID subunit 11, putative, expressed
Blast result AT4G20280 : 4.60E-49
Blast annotation: TBP-associated factor 11
2.Location
Scaffold: PH01000240
Strand: -
| Region | Start | End |
| gene | 296819 | 299489 |
| mRNA | 296819 | 299489 |
| exon | 296819 | 297008 |
| exon | 297335 | 297416 |
| exon | 298139 | 298177 |
| exon | 298642 | 299489 |
| CDS | 296881 | 297008 |
| CDS | 297335 | 297416 |
| CDS | 298139 | 298177 |
| CDS | 298642 | 298986 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | details | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF04719.13 | TAFII28 | 112 | 197 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Basal transcription factors | transcription initiation factor TFIID subunit 11 | ko03022 | K03135 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0005634 | nucleus |
| GO:0006367 | transcription initiation from RNA polymerase II promoter |
| GO:0046982 | protein heterodimerization activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.