PH01000241G0930's details annotation
1.Annotation
ICBR annotation: 5-nucleotidase surE, putative, expressed
Blast result AT1G72880 : 1.20E-95
Blast annotation: Survival protein SurE-like phosphatase/nucleotidase
2.Location
Scaffold: PH01000241
Strand: -
| Region | Start | End |
| gene | 613337 | 618064 |
| mRNA | 613337 | 618064 |
| exon | 613337 | 614121 |
| exon | 614254 | 614319 |
| exon | 614589 | 614699 |
| exon | 614783 | 614935 |
| exon | 616181 | 616334 |
| exon | 616451 | 616528 |
| exon | 616607 | 616650 |
| exon | 616738 | 616805 |
| exon | 616916 | 617010 |
| exon | 617182 | 618064 |
| CDS | 613942 | 614121 |
| CDS | 614254 | 614319 |
| CDS | 614589 | 614699 |
| CDS | 614783 | 614935 |
| CDS | 616181 | 616334 |
| CDS | 616451 | 616528 |
| CDS | 616607 | 616650 |
| CDS | 616738 | 616805 |
| CDS | 616916 | 617010 |
| CDS | 617182 | 617486 |
3.Network
| Co-expression Network Category | Global Network | Conditional Network | |
| Co-expression Positive |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Co-expression Negative |
Top300 PCC genelist MR network genelist |
Top300 PCC genelist MR network genelist |
|
| Predict protein-portein interaction | null | ||
| miRNA-targets relationship | null | ||
4.Functional module
| Method | Module ID | Function Annotation |
| coexpression network | null | null |
5.Cis-elements
Details in 3kb promoter region
6.Expression profilings
7.Gene family
| Category | Family |
| null | null |
8.Protein domain
| Pfam Accession | Pfam Annotation | Alignment Start | Alignment Start |
| PF01975.16 | SurE | 67 | 256 |
9.KEGG Pathway
| Pathway | KEGG Ortholog | Pathway ID | KO |
| Purine metabolism | 5'-nucleotidase [EC:3.1.3.5] | ko00230 | K03787 |
| Pyrimidine metabolism | 5'-nucleotidase [EC:3.1.3.5] | ko00240 | K03787 |
| Nicotinate and nicotinamide metabolism | 5'-nucleotidase [EC:3.1.3.5] | ko00760 | K03787 |
10.Gene Ontology
| GO Accession | GO Annotation |
| GO:0016787 | hydrolase activity |
Maintained by Xuelian Ma - Zhen Su's Lab - China Agricultural University
© 2017 All Rights Reserved.
© 2017 All Rights Reserved.